PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P26300_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HD-ZIP
Protein Properties Length: 258aa    MW: 29150.8 Da    PI: 8.1677
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P26300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.3e-19121174255
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                            rk+ ++tkeq   Le+ F++++ ++ ++++ LAk+l+L  rqV vWFqNrRa++
  GSMUA_Achr9P26300_001 121 RKKLRLTKEQSSLLEDKFKEHSSLNPKQKQALAKQLNLRPRQVEVWFQNRRARW 174
                            788899***********************************************9 PP

2HD-ZIP_I/II110.89e-36121210189
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt.ktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                            +kk+rl+keq++lLE++F+e++ L+p++K++la++L+l+prqv+vWFqnrRAR+ k+k++E++ e+L+r++++l+ee++rL+ke ++L
  GSMUA_Achr9P26300_001 121 RKKLRLTKEQSSLLEDKFKEHSSLNPKQKQALAKQLNLRPRQVEVWFQNRRARWtKLKKTEVELEFLRRCCETLTEEKRRLQKELQDL 208
                            69***************************************************8799******************************9 PP

            HD-ZIP_I/II  88 re 89 
                            ++
  GSMUA_Achr9P26300_001 209 EN 210
                            86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-18117178IPR009057Homeodomain-like
PROSITE profilePS5007117.297117177IPR001356Homeobox domain
SMARTSM003892.5E-16119181IPR001356Homeobox domain
PfamPF000464.8E-16121174IPR001356Homeobox domain
CDDcd000861.03E-16121178No hitNo description
Gene3DG3DSA:1.10.10.601.1E-17126174IPR009057Homeodomain-like
SMARTSM003409.9E-12178222IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAMDDHDRDD TPHTGLSLTL SYDGRSDLSI GSRPHSSSGL ELQRSSSTPK ALEPSLTLAL  60
PGDVCASVEV EMGRDIGSRH SPPPQSHHPC KIKREDDVRS EEVEKVSSRI SDEEEEDSGA  120
RKKLRLTKEQ SSLLEDKFKE HSSLNPKQKQ ALAKQLNLRP RQVEVWFQNR RARWTKLKKT  180
EVELEFLRRC CETLTEEKRR LQKELQDLEN SHKLSATRHM QIPAMCPSCK KVIGGAETGS  240
PLPASTPRFF NPFAHHAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419027.10.0PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466043e-60HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLM0U3N70.0M0U3N7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P26300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-54HD-ZIP family protein